Selected Publications
For the full publication list, see [Google Scholar Profile, DBLP, Semantic Scholar]
* indicates authors with equal contributions.
2025
Towards a Human-AI Collaborative Medical Research Lifecycle: A Pilot Study
Qingyun Wang, Yao Ge, Qingyu Chen, Zhiyong Lu. in AMIA 2025 Tutorial.
Self-Correction is More than Refinement: A Learning Framework for Visual and Language Reasoning Tasks
Jiayi He, Hehai Lin, Qingyun Wang, Yi Fung, Heng Ji. in ACL 2025 Findings.
[Paper] [Code]
CALM: Unleashing the Cross-Lingual Self-Aligning Ability of Language Models
Yumeng Wang, Zhiyuan Fan, Qingyun Wang, Yi Fung, Heng Ji. in NAACL 2025 Findings, Jan 2025.
[Paper] [Code] [Bib]
2024
SciMON: Scientific Inspiration Machines Optimized for Novelty
Qingyun Wang, Doug Downey, Heng Ji, Tom Hope. in ACL 2024.
[Paper] [Code/Dataset] [Slides] [Poster] [Bib]
Chem-FINESE: Validating Fine-Grained Few-shot Entity Extraction through Text Reconstruction
Qingyun Wang, Zixuan Zhang, Hongxiang Li, Xuan Liu, Jiawei Han, Huimin Zhao, Heng Ji. in EACL 2024 Findings, Mar 2024.
[Paper] [Code] [Dataset] [Slides] [Poster] [Bib]
Towards a Human-Computer Collaborative Scientific Paper Lifecycle: A Pilot Study and Hands-On Tutorial
Qingyun Wang, Carl Edwards, Heng Ji, Tom Hope. in COLING 2024 Tutorial.
[Paper] [Bib]
Named Entity Recognition Under Domain Shift via Metric Learning for Life Sciences 
Hongyi Liu, Qingyun Wang, Payam Karisani, Heng Ji. in NAACL-HLT 2024. (Oral Presentation)
[Paper] [Code] [Bib]
Gene-Metabolite Association Prediction with Interactive Knowledge Transfer Enhanced Graph for Metabolite Production
Kexuan Xin, Qingyun Wang, Junyu Chen, Pengfei Yu, Huimin Zhao, Heng Ji. in BIBM 2024.
[Paper]
L+M-24: Building a Dataset for Language+Molecules @ ACL 2024
Carl Edwards, Qingyun Wang, Lawrence Zhao, Heng Ji. in Proceedings of the 1st Workshop on Language + Molecules (L+M 2024 @ ACL 2024).
[Paper] [Code/Dataset] [Bib]
Language + Molecules
Carl Edwards, Qingyun Wang, Heng Ji. in EACL 2024 Tutorial.
[Paper] [Bib]
Schema-Guided Culture-Aware Complex Event Simulation with Multi-Agent Role-Play
Sha Li, Revanth Gangi Reddy, Khanh Duy Nguyen, Qingyun Wang, Yi Fung, Chi Han, Jiawei Han, Kartik Natarajan, Clare R. Voss, Heng Ji. in EMNLP 2024 System Demonstrations.
[Paper] [Demo] [Video] [Bib]
MLR-copilot: Autonomous machine learning research based on large language models agents
Ruochen Li, Teerth Patel, Qingyun Wang, Xinya Du. in arXiv 2024.
[Paper] [Code] [Demo] [Video]
2023
Multimedia Generative Script Learning for Task Planning
Qingyun Wang, Manling Li, Hou Pong Chan, Lifu Huang, Julia Hockenmaier, Girish Chowdhary, Heng Ji. in ACL 2023 Findings. (Findings Spotlight Presentation)
[Paper] [Code] [Dataset] [Slides] [Poster] [Website] [Bib]
2022
A Survey of Knowledge-Enhanced Text Generation
Wenhao Yu, Chenguang Zhu, Zaitang Li, Zhiting Hu, Qingyun Wang, Heng Ji, Meng Jiang. ACM Computing Surveys
[Paper] [Paper List]
2021
COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation
Qingyun Wang, Manling Li, Xuan Wang, Nikolaus Parulian, Guangxing Han, Jiawei Ma, Jingxuan Tu, Ying Lin, Haoran Zhang, Weili Liu, Aabhas Chauhan, Yingjun Guan, Bangzheng Li, Ruisong Li, Xiangchen Song, Yi Fung, Heng Ji, Jiawei Han, Shih-Fu Chang, James Pustejovsky, David Liem, Ahmed Elsayed, Martha Palmer, Jasmine Rah, Clare Voss, Cynthia Schneider, Boyan Onyshkevych. in NAACL-HLT 2021 System Demonstrations. (Best Demo Award🏆)
[Paper][Dataset] [Slides] [Poster] [Bib] [Talk]
Stage-wise Fine-tuning for Graph-to-Text Generation
Qingyun Wang, Semih Yavuz, Xi Victoria Lin, Heng Ji, Nazneen Fatema Rajani. in ACL-IJCNLP 2021 SRW. (Ranked 1st in Paper with Code at the time of publication)
[Paper] [Code] [Dataset] [Slides] [Poster] [Bib]
Knowledge-Enriched Natural Language Generation
Wenhao Yu, Meng Jiang, Zhiting Hu, Qingyun Wang, Heng Ji, Nazneen Rajani.
in EMNLP 2021 Tutorial.
[Paper] [Bib]
2020
ReviewRobot: Explainable Paper Review Generation based on Knowledge Synthesis
Qingyun Wang, Qi Zeng, Lifu Huang, Kevin Knight, Heng Ji, Nazneen Fatema Rajani. in INLG 2020. (Oral Presentation)
[Paper] [Code] [Sample Output] [ReviewRobot dataset] [Bib] [Slides]
2019 and Before
PaperRobot: Incremental Draft Generation of Scientific Ideas
Qingyun Wang, Lifu Huang, Zhiying Jiang, Kevin Knight, Heng Ji, Mohit Bansal, Yi Luan. in ACL 2019.
[Paper] [Bib] [Paper Reading Dataset] [Paper Writing Dataset] [Code] [Poster] [Sample Output]
Paper Abstract Writing through Editing Mechanism
Qingyun Wang*, Zhihao Zhou*, Lifu Huang, Spencer Whitehead, Boliang Zhang, Heng Ji, Kevin Knight. in ACL 2018.
[Paper] [Code] [Dataset] [Bib] [Poster] [Fake Handbook*] *Fake abstracts for the main conference
GAIA at SM-KBP 2019-A Multi-media Multi-lingual Knowledge Extraction and Hypothesis Generation System
Manling Li, Ying Lin, Ananya Subburathinam, Spencer Whitehead, Xiaoman Pan, Di Lu, Qingyun Wang, Tongtao Zhang, Lifu Huang, Heng Ji, etc. in NIST TAC-KBP 2019.
[Paper]
Describing a Knowledge Base
Qingyun Wang, Xiaoman Pan, Lifu Huang, Boliang Zhang, Zhiying Jiang, Heng Ji, and Kevin Knight, in Proceedings of 11th International Conference on Natural Language Generation (INLG 2018). (Oral Presentation)
[Paper] [Bib] [Dataset] [Code] [Slides]
ELISA System Description for LoReHLT 2018
Ronald Ahmed Cardenas Acosta, Thamme Gowda, Ulf Hermjakob, Nima Pourdamghani, Michael Pust, Jibiao Shen, Tian Xie, Jonathan May, Nikolaos Malandrakis, Victor Martinez, Pavlos Papadopoulos, Anil Ramakrishna, Karan Singla, Ruchir Travadi, Colin Vaz, Shrikanth Narayanan, Kenton Murray, Toan Nguyen, David Chiang, Boliang Zhang, Xiaoman Pan, Ying Lin, Di Lu, Lifu Huang, Tongtao Zhang, Kevin Blissett, Ni Zhang, Spencer Whitehead, Ananya Subburathinam, Diya Li, Qingyun Wang, Zhiying Jiang, Heng Ji, etc. in LoReHLT 2018.
[Paper]
GAIA - A Multi-media Multi-lingual Knowledge Extraction and Hypothesis Generation System
Tongtao Zhang, Ananya Subburathinam, Ge Shi, Lifu Huang, Di Lu, Xiaoman Pan, Manling Li, Boliang Zhang, Qingyun Wang, Spencer Whitehead, Heng Ji, etc. in NIST TAC-KBP 2018.
[Paper]
A Two-Layer Dialogue Framework For Authoring Social Bots
Jieming Ji, Qingyun Wang, Zev Battad, Jiashun Gou, Jingfei Zhou, Rahul Divekar, Craig Carlson, Mei Si. in 1st Proceedings of Alexa Prize 2017. (Amazon Alexa Prize Finalist)
[Paper] [Code]
