Selected Publications
For the full publication list, see [Google Scholar Profile, dblp, Semantic Scholar]
Scientific Knowledge Acquisition
Named Entity Recognition Under Domain Shift via Metric Learning for Life Sciences 
Hongyi Liu, Qingyun Wang, Payam Karisani, and Heng Ji, in NAACL-HLT 2024, (Oral Presentation), Jun 2024. [Paper] [Code] [Bib]
Chem-FINESE: Validating Fine-Grained Few-shot Entity Extraction through Text Reconstruction
Qingyun Wang, Zixuan Zhang, Hongxiang Li, Xuan Liu, Jiawei Han, Huimin Zhao, and Heng Ji. in EACL 2024 Findings, Mar 2024. [Paper] [Code] [Dataset] [Slides] [Poster] [Bib]
COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation
Qingyun Wang, Manling Li, Xuan Wang, Nikolaus Parulian, Guangxing Han, Jiawei Ma, Jingxuan Tu, Ying Lin, Haoran Zhang, Weili Liu, Aabhas Chauhan, Yingjun Guan, Bangzheng Li, Ruisong Li, Xiangchen Song, Yi Fung, Heng Ji, Jiawei Han, Shih-Fu Chang, James Pustejovsky, David Liem, Ahmed Elsayed, Martha Palmer, Jasmine Rah, Clare Voss, Cynthia Schneider, Boyan Onyshkevych (2021). in NAACL-HLT 2021 System Demonstrations, June 2021, (Best Demo Award). [Paper][Dataset] [Slides] [Poster] [Bib]
Scientific Knowledge-aware Hypothesis Discovery
SciMON: Scientific Inspiration Machines Optimized for Novelty
Qingyun Wang, Doug Downey, Heng Ji, and Tom Hope (2024), in ACL 2024, Aug 2024. [Paper] [Code/Dataset] [Slides] [Poster] [Bib]
Gene-Metabolite Association Prediction with Interactive Knowledge Transfer Enhanced Graph for Metabolite Production
Kexuan Xin, Qingyun Wang, Junyu Chen, Pengfei Yu, Huimin Zhao, and Heng Ji (2024), in BIBM 2024, Aug 2024. [Paper]
L+M-24: Building a Dataset for Language+Molecules @ ACL 2024
Carl Edwards, Qingyun Wang, Lawrence Zhao, and Heng Ji (2024), in Proceedings of the 1st Workshop on Language + Molecules (L+M 2024 @ ACL 2024), Aug 2024. [Paper] [Code/Dataset] [Bib]
Evidence-based Assessment for Scientific Papers
ReviewRobot: Explainable Paper Review Generation based on Knowledge Synthesis
Qingyun Wang, Qi Zeng, Lifu Huang, Kevin Knight, Heng Ji, and Nazneen Fatema Rajani (2020), in INLG 2020. (Oral Presentation). [Paper] [Code] [Sample Output] [ReviewRobot dataset] [Bib] [Slides]
Multimedia Task Planning
Multimedia Generative Script Learning for Task Planning
Qingyun Wang, Manling Li, Hou Pong Chan, Lifu Huang, Julia Hockenmaier, Girish Chowdhary, and Heng Ji. in ACL 2023 Findings, Jul 2023, (Findings Spotlight Presentation). [Paper] [Code] [Dataset] [Slides] [Poster] [Website] [Bib]
Experiment Execution
MLR-copilot: Autonomous machine learning research based on large language models agents
Ruochen Li, Teerth Patel, Qingyun Wang (mentor), and Xinya Du. in submission to ACL Demo 2025, Sep 2024. [Paper] [Code] [Demo] [Video]
Scientific Knowledge-guided Paper Writing
PaperRobot: Incremental Draft Generation of Scientific Ideas
Qingyun Wang, Lifu Huang, Zhiying Jiang, Kevin Knight, Heng Ji, Mohit Bansal, and Yi Luan (2019), in ACL 2019. [Paper] [Bib] [Paper Reading Dataset] [Paper Writing Dataset] [Code] [Poster] [Sample Output]
Paper Abstract Writing through Editing Mechanism
Qingyun Wang*, Zhihao Zhou*(equal contribution), Lifu Huang, Spencer Whitehead, Boliang Zhang, Heng Ji, and Kevin Knight (2018). in ACL 2018. [Paper] [Code] [Dataset] [Bib] [Poster] [Fake Handbook*] *Fake abstracts for the main conference
Multi-agent Simulation
Schema-Guided Culture-Aware Complex Event Simulation with Multi-Agent Role-Play
Sha Li, Revanth Gangi Reddy, Khanh Duy Nguyen, Qingyun Wang, Yi Fung, Chi Han, Jiawei Han, Kartik Natarajan, Clare R. Voss, Heng Ji (2024), in EMNLP 2024 System Demonstrations, Oct 2024. [Paper] [Demo] [Video] [Bib]
Knowledge Alignment
CALM: Unleashing the Cross-Lingual Self-Aligning Ability of Language Models
Yumeng Wang, Zhiyuan Fan, Qingyun Wang, Yi Fung, Heng Ji (2025), in NAACL 2025 Findings, Jan 2025.
KG-to-Text Generation
Stage-wise Fine-tuning for Graph-to-Text Generation
Qingyun Wang, Semih Yavuz, Xi Victoria Lin, Heng Ji, and Nazneen Fatema Rajani (2021), in ACL-IJCNLP 2021 SRW. [Paper] [Code] [Dataset] [Slides] [Poster] [Bib]
Describing a Knowledge Base
Qingyun Wang, Xiaoman Pan, Lifu Huang, Boliang Zhang, Zhiying Jiang, Heng Ji, and Kevin Knight (2018), in Proceedings of 11th International Conference on Natural Language Generation (INLG 2018). (Oral Presentation). [Paper] [Bib] [Dataset] [Code] [Slides]
Survey
A Survey of Knowledge-Enhanced Text Generation
Wenhao Yu, Chenguang Zhu, Zaitang Li, Zhiting Hu, Qingyun Wang, Heng Ji, Meng Jiang (2020). ACM Computing Surveys, Jan 2022 [Paper] [Paper List]